PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr8P19990_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 241aa    MW: 26285.4 Da    PI: 10.5631
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr8P19990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.43e-3560142282
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssa 82 
                            +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l++++  s+s++   a++ sss 
  GSMUA_Achr8P19990_001  60 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDQLAELPPWSPSATivAAHAASSSP 142
                            79**************************************************************4444433433333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3160136IPR005333Transcription factor, TCP
PROSITE profilePS5136932.32862120IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGEGHNHHSL GYNQLSLHHH HHQQQQLQRP QPRPRHGGGM RGGVIGEIVE VQGGHIVRST  60
GRKDRHSKVC TAKGPRDRRV RLAAHTAIQF YDVQDRLGYD RPSKAVDWLI KNAKAAIDQL  120
AELPPWSPSA TIVAAHAASS SPGWAEQGQR IAVPLHSVLG QSQFFCQRGP LQSSNSPAIR  180
AWADPVDATT DHRMQPALHP SISTIGFTSG AGFSGLRIPA RFQGEEEHDG ITSKPPSASR  240
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688632e-71AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818312e-71FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409694.11e-66PREDICTED: transcription factor PCF5-like
SwissprotQ8LPR58e-51TCP4_ARATH; Transcription factor TCP4
TrEMBLM0TS021e-178M0TS02_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P19990_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-42TCP family protein